3D multiomic kidney cancer reconstruction and niche visualization on G4X
3D niches from multiomic reconstruction of 10 serial renal cell carcinoma sections on single G4X flowcell (6.2 M cells).
Sensitivity

Sensitive Transcript Detection

G4X employs padlock probes and rolling circle amplification to achieve high sensitivity in transcript detection. This allows for the accurate identification and localization of even low-abundance transcripts within a tissue sample.

Median number of transcripts and unique genes per cell for each FFPE tissue type in both healthy and cancerous tissues (color coordinated). Data from 300 plex panel.
Specificity

Low False Discovery Rates

Padlock probes with dual-binding sites to ensure high specificity in transcript detection.  Furthermore, the platform incorporates robust internal controls to minimize variability and ensure accurate quantification of target transcripts within each experiment.

Negative control probe (NCP) and negative control sequence (NCS) false discovery rates (FDR) for each FFPE tissue type. Data from 300 plex panel.
Reproducibility

Exceptional Reproducibility

Robust chemistry, precisely controlled workflow, and inherent system throughput enable exceptional section-to-section reproducibility within a lane, across flow cells and across runs. This consistency ensures reliable and comparable results across multiple experiments and samples, facilitating robust spatial mulitiomic analysis

Pearson correlation of per-probe and per-gene expression with positive probes (green) and negative controls between serial sections of kidney cancer FFPE sample profiled on two separate flow cells. Data generated with 300 plex panel.
Multiomic Correlation

Correlative Multiomic Results

Simultaneous identification of protein and transcript expression enables internal validation of single-cell results, strengthening confidence in results and revealing the complex interplay between gene expression and protein activity.

Protein and transcript overlay from colon cancer sample
arrow right
Transcripts
protein
Precision

Precise Single Cell Insights

Combined, multiomic analysis with G4X provides a detailed understanding of cellular identity and function within the tissue microenvironment for a deeper understanding of cell interactions and neighborhood dynamics.

Dimensionally reduced multi-modal (RNA+Protein) UMAPs with cell typing, as identified on colon cancer sample.
G4Xyz

Comprehensive 3D Spatial Analysis

Exceptional reproducibility of multiomic results on G4X enables robust serial section reconstruction, for a complete 3D understanding of the tissue microenvironment with enhanced insights into cellular organization, interactions, and function.

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Ten 1cm2, 5um thick serial sections of an FFPE renal cell carcinoma sample profiled on a single G4X flow cell. Multiomic results on 6.2 million cells and 483 million transcripts were followed by unsupervised clustering, automated cell type annotation and 3D niche detection.

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AGBT 2025
In-situ multiomic profiling of tumor-immune interactions in 2D and 3D on the G4X Spatial Sequencer
Kenneth G. et al

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